Basic Information
Locus ID:
TC07G2672
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 104659047 | 104673741 | - | TC07G2672 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 143,990.69 Da | 50.90 | 68.84 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04301 | NAT_SF | 1051 | 1111 | 0.00110828 | - |
| CDD | cd15532 | PHD2_CHD_II | 856 | 895 | 9.84073E-16 | - |
| Pfam | PF02178 | AT hook motif | 452 | 461 | 19.0 | IPR017956 |
| Pfam | PF02178 | AT hook motif | 416 | 425 | 1.4 | IPR017956 |
| Pfam | PF02178 | AT hook motif | 480 | 489 | 0.3 | IPR017956 |
| Pfam | PF02178 | AT hook motif | 386 | 397 | 0.15 | IPR017956 |
| Pfam | PF16135 | Tify domain binding domain | 778 | 827 | 5.1E-19 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 842 | 897 | 2.44E-13 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 1043 | 1130 | 7.48E-6 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 843 | 911 | 6.2E-17 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 1035 | 1145 | 5.0E-5 | - |
| SMART | SM00384 | AT_hook_2 | 479 | 491 | 0.8 | IPR017956 |
| SMART | SM00249 | PHD_3 | 897 | 957 | 4.7 | IPR001965 |
| SMART | SM00384 | AT_hook_2 | 415 | 427 | 7.6 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 386 | 398 | 0.44 | IPR017956 |
| SMART | SM00249 | PHD_3 | 855 | 896 | 8.7E-11 | IPR001965 |
| SMART | SM00384 | AT_hook_2 | 448 | 462 | 170.0 | IPR017956 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 853 | 898 | 9.9884 | IPR019787 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 992 | 1148 | 9.600022 | IPR000182 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 262 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1295 | 1314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 437 | 460 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 349 | 365 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 366 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 334 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 680 | 720 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1185 | 1230 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1185 | 1282 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 406 | 425 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 275 | - | - |
| Coils | Coil | Coil | 217 | 244 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05380.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein. | 0 |
| RefSeq | XP_010679053.2 | uncharacterized protein LOC104894503 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RSQ4 | PHD-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_032500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology