Basic Information
Locus ID:
TC07G2289
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 90260313 | 90270827 | + | TC07G2289 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 65,708.79 Da | 43.62 | 90.99 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 167 | 183 | 1.2 | IPR001611 |
| Pfam | PF18511 | F-box | 20 | 60 | 3.1E-18 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 79 | 125 | 7.6E-21 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 39 | 550 | 8.63E-35 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 53 | 1.18E-6 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 17 | 58 | 1.9E-16 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 59 | 586 | 1.8E-172 | IPR032675 |
| SMART | SM00256 | fbox_2 | 22 | 63 | 0.0052 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 495 | 519 | 97.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 326 | 349 | 120.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 446 | 469 | 67.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 117 | 141 | 120.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 386 | 410 | 1.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 142 | 167 | 20.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 470 | 494 | 340.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_010686279.1 | protein TRANSPORT INHIBITOR RESPONSE 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9QY36 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_133610 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology