Basic Information
Locus ID:
TC07G2259
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
FBD-associated F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 88739468 | 88741360 | - | TC07G2259 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 56,660.97 Da | 43.80 | 102.32 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08387 | FBD | 387 | 429 | 1.1E-5 | IPR006566 |
| Pfam | PF00646 | F-box domain | 17 | 60 | 4.0E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 57 | 6.8E-10 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 147 | 431 | 5.34E-9 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 17 | 60 | 4.5E-8 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 117 | 433 | 6.3E-7 | IPR032675 |
| SMART | SM00256 | fbox_2 | 21 | 61 | 2.0E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 15 | 61 | 10.848683 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G42730.1 | F-box family protein. | 0 |
| RefSeq | XP_021858789.1 | F-box/LRR-repeat protein At3g26922-like [Spinacia oleracea] | 0 |
| Q0WR05 | F-box/LRR-repeat protein At2g42730 OS=Arabidopsis thaliana OX=3702 GN=At2g42730 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QCV7 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_200330 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg6181 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2053 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah008888 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G007350, COCNU_04G007380 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103717301, gene-LOC103718683, gene-LOC103719349 |
| Asparagaceae | Asparagus officinalis | 8 | AsparagusV1_03.2306.V1.1, AsparagusV1_03.939.V1.1 ... |
| Plantaginaceae | Plantago ovata | 2 | Pov_00019973, Pov_00040073 |
| Poaceae | Echinochloa crus-galli | 22 | AH06.2738, AH06.2740, AH06.2743, AH06.2746, AH06.2747 ... |
| Poaceae | Eleusine coracana subsp. coracana | 9 | gene-QOZ80_2AG0102240, gene-QOZ80_2BG0155600 ... |
| Poaceae | Hordeum vulgare | 7 | HORVU.MOREX.r3.2HG0196820.1, HORVU.MOREX.r3.6HG0564870.1 ... |
| Poaceae | Lolium multiflorum | 10 | gene-QYE76_005122, gene-QYE76_017618, gene-QYE76_020634 ... |
| Poaceae | Oryza coarctata | 7 | Oco02G006440, Oco02G006460, Oco03G002930, Oco04G002880 ... |
| Poaceae | Oryza sativa | 4 | LOC_Os01g13910.1, LOC_Os02g06520.1, LOC_Os06g47100.1 ... |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_04G044700, gene-BS78_10G235400 ... |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0202543, Pt_Chr0202552, Pt_Chr0307263, Pt_Chr0307311 ... |
| Poaceae | Sporobolus alterniflorus | 9 | Chr02G032030, Chr02G032040, Chr05G010020, Chr05G010030 ... |
| Poaceae | Thinopyrum elongatum | 9 | Tel1E01G463200, Tel2E01G766500, Tel5E01G370100 ... |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC2AG064410, gene_TRIDC2BG068680 ... |
| Poaceae | Triticum aestivum | 18 | TraesCS2A02G451200.1, TraesCS2B02G472500.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb207690_P001, Zm00001eb232670_P001 ... |
| Poaceae | Zoysia japonica | 5 | nbis-gene-29923, nbis-gene-33700, nbis-gene-40602 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g12219, Zma_g14976, Zma_g15906, Zma_g21105, Zma_g33279 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG14.904 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g00740 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3578 |
| Tamaricaceae | Tamarix chinensis | 2 | TC07G2259, TC07G2260 |