Basic Information
Locus ID:
TC07G2208
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 86114615 | 86147718 | - | TC07G2208 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 132,910.80 Da | 48.27 | 80.35 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1038 | 1145 | 3.70601E-54 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 459 | 776 | 1.08349E-85 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1036 | 1135 | 9.3E-17 | IPR001650 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 892 | 928 | 7.5E-5 | IPR018957 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 476 | 853 | 6.8E-67 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 785 | 1195 | 1.59E-55 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 889 | 951 | 2.7E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 449 | 776 | 2.97E-44 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 544 | 644 | 1.5E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 662 | 789 | 1.5E-28 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 885 | 943 | 1.9E-9 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 791 | 1205 | 6.4E-62 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 429 | 525 | 4.6E-11 | IPR038718 |
| SMART | SM00490 | helicmild6 | 1052 | 1135 | 3.2E-19 | IPR001650 |
| SMART | SM00487 | ultradead3 | 455 | 751 | 2.5E-25 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1029 | 1183 | 15.602856 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 892 | 931 | 10.246822 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 474 | 738 | 12.451889 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 907 | 916 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 625 | 665 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 625 | 652 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_002263027.3 | PREDICTED: helicase-like transcription factor CHR28 isoform X1 [Vitis vinifera] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B6ZNZ8 | Helicase-like transcription factor CHR28 (Fragment) OS=Davidia involucrata OX=16924 GN=Din_015693 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology