Basic Information
Locus ID:
TC07G1270
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 38735207 | 38746568 | + | TC07G1270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 100,898.48 Da | 57.03 | 79.62 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 261 | 370 | 5.2E-6 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 781 | 816 | 2.5E-5 | IPR014720 |
| SUPERFAMILY | SSF56784 | HAD-like | 144 | 395 | 4.12E-18 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 750 | 817 | 8.77E-11 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 139 | 400 | 6.2E-25 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 748 | 834 | 7.6E-8 | - |
| SMART | SM00358 | DRBM_3 | 753 | 817 | 1.9E-7 | IPR014720 |
| SMART | SM00577 | forpap2 | 203 | 379 | 3.6E-15 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 752 | 818 | 11.96538 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 144 | 392 | 15.328115 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 718 | 751 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 686 | 700 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 879 | 901 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 684 | 706 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 718 | 741 | - | - |
| Coils | Coil | Coil | 165 | 185 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_028072200.1 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1 [Camellia sinensis] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B6ZK95 | protein-serine/threonine phosphatase OS=Davidia involucrata OX=16924 GN=Din_013197 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology