Basic Information
Locus ID:
TC07G1248
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 37589336 | 37600793 | - | TC07G1248 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.36 | 86,293.58 Da | 46.62 | 81.74 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 8 | 262 | 4.8865E-62 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 7 | 43 | 0.019 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 616 | 774 | 2.5E-49 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 51 | 86 | 0.013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 228 | 252 | 0.25 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 92 | 128 | 3.5E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 174 | 212 | 9.2E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 134 | 170 | 8.6E-10 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 6 | 293 | 1.08E-68 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 132 | 1.1E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 133 | 303 | 5.5E-36 | IPR015943 |
| SMART | SM00320 | WD40_4 | 215 | 253 | 0.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 4 | 44 | 0.0062 | IPR001680 |
| SMART | SM00320 | WD40_4 | 89 | 128 | 2.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 131 | 170 | 3.2E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 47 | 86 | 9.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 173 | 212 | 2.0E-9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 54 | 95 | 9.704691 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 54 | 95 | 13.282162 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 138 | 175 | 13.15831 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 11 | 53 | 10.207686 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 96 | 137 | 14.719144 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 180 | 221 | 14.852817 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 138 | 179 | 17.025 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 96 | 130 | 11.5765 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 180 | 215 | 11.73468 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 199 | 213 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 157 | 171 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 157 | 171 | 2.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 115 | 129 | 2.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 199 | 213 | 2.0E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 777 | 19.235649 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 435 | 456 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 411 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 345 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 481 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61210.3 | - | 0 |
| RefSeq | XP_021860219.1 | katanin p80 WD40 repeat-containing subunit B1 homolog isoform X5 [Spinacia oleracea] | 0 |
| F4HTH8 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2 OS=Arabidopsis thaliana OX=3702 GN=KTN80.2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9Q918 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Spinacia oleracea OX=3562 GN=SOVF_206220 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology