Basic Information
Locus ID:
TC07G1245
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 37399391 | 37405513 | - | TC07G1245 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.61 | 55,362.96 Da | 61.42 | 96.86 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 37 | 75 | 3.9E-6 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 189 | 441 | 6.98E-16 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 35 | 94 | 2.88E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 24 | 116 | 2.0E-8 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 172 | 454 | 6.6E-15 | IPR032675 |
| SMART | SM00256 | fbox_2 | 41 | 81 | 3.3E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 35 | 85 | 11.140122 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03100.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_050232884.1 | putative F-box protein At1g49610 [Mercurialis annua] | 0 |
| Q501G5 | F-box protein At5g03100 OS=Arabidopsis thaliana OX=3702 GN=At5g03100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067LNB6 | F-box domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_11867 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G55900.1 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG14.1166 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.38 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24763, nbisL1-mrna-24764 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000027l.260 |
| Salicaceae | Populus euphratica | 1 | populus_peu04600 |
| Tamaricaceae | Reaumuria soongarica | 14 | MSTRG.13023_chr07_+, MSTRG.13852_chr08_-, MSTRG.4576_chr03_- ... |
| Tamaricaceae | Tamarix chinensis | 2 | TC07G1245, TC08G0764 |