Basic Information
Locus ID:
TC07G0688
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 18361745 | 18368963 | - | TC07G0688 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.52 | 55,179.26 Da | 55.63 | 75.52 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 317 | 365 | 7.51872E-16 | - |
| Pfam | PF12906 | RING-variant domain | 317 | 364 | 2.3E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 313 | 368 | 1.1E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 302 | 372 | 2.1E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 316 | 365 | 2.3E-20 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 317 | 365 | 8.830534 | IPR001841 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 309 | 371 | 20.171276 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 309 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 466 | 493 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 502 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010037957.2 | uncharacterized protein LOC104426553 [Eucalyptus grandis] | 0 |
| TrEMBL | A0A059A7D4 | RING-CH-type domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K03240 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology