Basic Information
Locus ID:
TC07G0488
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 13180454 | 13185047 | + | TC07G0488 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 114,072.43 Da | 49.92 | 65.20 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 760 | 783 | 0.013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 570 | 606 | 1.5E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 611 | 648 | 0.0017 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 461 | 494 | 1.0E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 457 | 787 | 2.02E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 442 | 550 | 5.3E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 551 | 817 | 8.6E-50 | IPR015943 |
| SMART | SM00320 | WD40_4 | 650 | 689 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 568 | 606 | 4.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 705 | 741 | 3.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 742 | 783 | 0.013 | IPR001680 |
| SMART | SM00320 | WD40_4 | 609 | 648 | 2.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 456 | 495 | 2.3E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 615 | 649 | 10.785595 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 763 | 792 | 9.205141 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 463 | 504 | 13.716598 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 575 | 610 | 11.523771 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 615 | 649 | 12.981398 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 463 | 497 | 11.312864 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 575 | 615 | 14.78598 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 593 | 607 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 482 | 496 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 635 | 649 | 2.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 482 | 496 | 2.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 593 | 607 | 2.5E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 404 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 275 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 832 | 970 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 188 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 215 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 867 | 970 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 839 | 860 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021854625.1 | uncharacterized protein LOC110793990 [Spinacia oleracea] | 0 |
| Q498F0 | WD repeat-containing protein 44 OS=Xenopus laevis OX=8355 GN=wdr44 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0J8CGL2 | WD_REPEATS_REGION domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_5g110220 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology