Basic Information
Locus ID:
TC07G0433
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 11354169 | 11355743 | + | TC07G0433 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.60 | 57,286.79 Da | 68.38 | 77.63 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 325 | 366 | 8.87573E-24 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 390 | 514 | 2.3E-26 | IPR010543 |
| Pfam | PF14369 | zinc-ribbon | 111 | 143 | 2.2E-13 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 324 | 366 | 1.4E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 305 | 373 | 3.09E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 291 | 372 | 7.6E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 325 | 365 | 1.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 325 | 366 | 12.208971 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 433 | 459 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_042509999.1 | E3 ubiquitin-protein ligase RDUF1-like [Macadamia integrifolia] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A834Z0M0 | RING-type E3 ubiquitin transferase OS=Tetracentron sinense OX=13715 GN=HHK36_016367 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology