Basic Information
Locus ID:
TC07G0299
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 7837978 | 7852645 | + | TC07G0299 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 94,539.19 Da | 50.55 | 82.97 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10845 | DSRM_RNAse_III_family | 672 | 735 | 3.85962E-10 | - |
| Pfam | PF00035 | Double-stranded RNA binding motif | 672 | 735 | 2.8E-6 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 250 | 359 | 5.4E-7 | IPR004274 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 672 | 735 | 9.43E-13 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 128 | 384 | 6.59E-18 | IPR036412 |
| Gene3D | G3DSA:3.30.160.20 | - | 668 | 741 | 3.4E-10 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 128 | 408 | 4.2E-27 | IPR023214 |
| SMART | SM00358 | DRBM_3 | 672 | 736 | 1.2E-8 | IPR014720 |
| SMART | SM00577 | forpap2 | 193 | 369 | 3.6E-14 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 671 | 737 | 13.179195 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 134 | 382 | 16.225962 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 797 | 819 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 797 | 846 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_010654171.1 | PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 [Vitis vinifera] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | D7TH87 | protein-serine/threonine phosphatase OS=Vitis vinifera OX=29760 GN=VIT_08s0007g02130 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology