Basic Information
Locus ID:
TC07G0268
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 7167724 | 7168736 | - | TC07G0268 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 15,455.77 Da | 54.43 | 109.25 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 22 | 61 | 1.2E-6 | IPR001810 |
| Pfam | PF00646 | F-box domain | 82 | 124 | 3.5E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 19 | 59 | 3.27E-11 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 79 | 125 | 3.66E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 67 | 132 | 2.4E-6 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 6 | 60 | 9.2E-7 | - |
| SMART | SM00256 | fbox_2 | 86 | 126 | 0.003 | IPR001810 |
| SMART | SM00256 | fbox_2 | 26 | 66 | 0.039 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 20 | 65 | 9.788908 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49030.2 | FBD, F-box and Leucine Rich Repeat domains containing protein. | 0 |
| RefSeq | XP_021306837.1 | F-box/LRR-repeat protein At1g06630 [Sorghum bicolor] | 0 |
| Q9SMU0 | Putative F-box/FBD/LRR-repeat protein At3g49030 OS=Arabidopsis thaliana OX=3702 GN=At3g49030 PE=4 SV=1 | 0 | |
| TrEMBL | A0A5J9UQF8 | F-box domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_28629 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg3430 |
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_14946, gene_2052, gene_21862, gene_26502 |
| Amaranthaceae | Atriplex hortensis | 48 | Ah002915, Ah002920, Ah003004, Ah004139, Ah004140, Ah004142 ... |
| Amaranthaceae | Beta vulgaris | 4 | BVRB_2g035510, BVRB_5g109100, BVRB_5g109110, BVRB_7g159590 |
| Amaranthaceae | Salicornia bigelovii | 21 | Sbi_jg15817, Sbi_jg17979, Sbi_jg19532, Sbi_jg19533 ... |
| Amaranthaceae | Salicornia europaea | 14 | Seu_jg10634, Seu_jg10635, Seu_jg1185, Seu_jg13817 ... |
| Amaranthaceae | Suaeda aralocaspica | 15 | GOSA_00003627, GOSA_00009189, GOSA_00009190, GOSA_00009191 ... |
| Amaranthaceae | Suaeda glauca | 41 | Sgl00558, Sgl05572, Sgl18083, Sgl22021, Sgl22137, Sgl27283 ... |
| Amaranthaceae | Chenopodium album | 51 | gene:ENSEOMG00000005049, gene:ENSEOMG00000007202 ... |
| Amaranthaceae | Chenopodium quinoa | 42 | CQ.Regalona.r1.2AG0012770, CQ.Regalona.r1.2AG0012790 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30150730 |
| Brassicaceae | Brassica nigra | 1 | BniB01g014240.2N |
| Plantaginaceae | Plantago ovata | 3 | Pov_00039776, Pov_00040470, Pov_00040689 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061951 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-29604, nbis-gene-29605 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG04.3150, evm.TU.LG04.3151, evm.TU.LG16.532 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627161 |
| Solanaceae | Solanum chilense | 1 | SOLCI004431500 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31115_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0268 |