Basic Information
Locus ID:
TC07G0211
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 5568907 | 5573305 | - | TC07G0211 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 102,238.13 Da | 53.98 | 77.35 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 674 | 709 | 5.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 775 | 810 | 0.0011 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 587 | 912 | 4.93E-48 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 93 | 360 | 2.51E-17 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 562 | 916 | 2.8E-113 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 95 | 361 | 9.1E-25 | - |
| SMART | SM00320 | WD40_4 | 729 | 768 | 0.51 | IPR001680 |
| SMART | SM00320 | WD40_4 | 772 | 810 | 1.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 819 | 858 | 22.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 874 | 914 | 74.0 | IPR001680 |
| SMART | SM00220 | serkin_6 | 44 | 353 | 5.9E-4 | IPR000719 |
| SMART | SM00320 | WD40_4 | 669 | 709 | 5.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 581 | 616 | 0.75 | IPR001680 |
| SMART | SM00320 | WD40_4 | 627 | 666 | 8.5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 676 | 711 | 11.978851 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 353 | 9.601946 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 676 | 711 | 9.99469 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 779 | 812 | 10.521959 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 779 | 812 | 12.647216 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 797 | 811 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 797 | 811 | 8.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 653 | 667 | 8.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 696 | 710 | 8.0E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 479 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 185 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 478 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.3 | - | 0 |
| RefSeq | XP_021722829.1 | protein SPA1-RELATED 4-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9D531 | 2-alkenal reductase (NAD(P)(+)) OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology