Basic Information
Locus ID:
TC06G2782
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Cell division cycle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 107996380 | 107998636 | - | TC06G2782 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.86 | 52,608.45 Da | 45.37 | 75.74 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 168 | 224 | 3.6E-7 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 296 | 334 | 0.024 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 384 | 419 | 0.0037 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 249 | 283 | 5.4E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 129 | 420 | 3.78E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 75 | 422 | 7.5E-123 | IPR015943 |
| SMART | SM00320 | WD40_4 | 160 | 199 | 1.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 337 | 377 | 310.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 202 | 238 | 3.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 244 | 283 | 5.5E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 292 | 334 | 2.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 380 | 419 | 1.3E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 167 | 208 | 13.382416 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 167 | 199 | 9.99469 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 251 | 283 | 13.649761 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 251 | 283 | 11.312864 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 387 | 420 | 12.279615 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 387 | 420 | 10.23196 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 406 | 420 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33260.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.2) | 0 |
| RefSeq | XP_010671158.1 | cell division cycle 20.2, cofactor of APC complex [Beta vulgaris subsp. vulgaris] | 0 |
| Q9S7I8 | Cell division cycle 20.2, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L226 | ANAPC4_WD40 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology