Basic Information
Locus ID:
TC06G2628
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 104215294 | 104228937 | - | TC06G2628 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 50,753.96 Da | 43.70 | 98.27 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 247 | 370 | 1.24392E-57 | - |
| CDD | cd18045 | DEADc_EIF4AIII_DDX48 | 36 | 236 | 2.44041E-119 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 260 | 368 | 4.6E-32 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 59 | 221 | 5.0E-43 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 102 | 376 | 3.72E-70 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 243 | 394 | 4.4E-53 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 24 | 242 | 1.3E-65 | IPR027417 |
| SMART | SM00487 | ultradead3 | 53 | 250 | 6.4E-55 | IPR014001 |
| SMART | SM00490 | helicmild6 | 287 | 368 | 1.2E-35 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 34 | 62 | 10.648938 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 246 | 445 | 24.511002 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 65 | 235 | 26.900335 | IPR014001 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19760.1 | eukaryotic initiation factor 4A-III. Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles. | 0 |
| RefSeq | XP_021861976.1 | eukaryotic initiation factor 4A-3 [Spinacia oleracea] | 0 |
| P41380 | Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1 | 0 | |
| TrEMBL | A0A249Y745 | DEAD-box ATP-dependent RNA helicase 2 OS=Hylocereus polyrhizus OX=1195597 GN=RH2 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology