Basic Information
Locus ID:
TC06G2290
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
ATPase family associated with various cellular activities (AAA)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 93297535 | 93304999 | - | TC06G2290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 90,991.08 Da | 42.40 | 85.37 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 528 | 661 | 1.90295E-22 | - |
| Pfam | PF17862 | AAA+ lid domain | 682 | 725 | 4.0E-12 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 530 | 660 | 1.7E-37 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 490 | 745 | 4.46E-58 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 662 | 732 | 2.5E-94 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 489 | 661 | 2.5E-94 | IPR027417 |
| SMART | SM00382 | AAA_5 | 526 | 663 | 7.0E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 633 | 652 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 473 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 727 | 753 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 406 | 473 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28000.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_018847323.2 | nuclear valosin-containing protein-like [Juglans regia] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A2I4GTV6 | nuclear valosin-containing protein-like OS=Juglans regia OX=51240 GN=LOC109010848 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology