Basic Information
Locus ID:
TC06G1946
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 75934587 | 75941751 | - | TC06G1946 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 104,530.64 Da | 34.33 | 103.64 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 622 | 884 | 1.86467E-93 | - |
| Pfam | PF13855 | Leucine rich repeat | 91 | 149 | 1.2E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 395 | 454 | 9.0E-7 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 619 | 881 | 1.3E-40 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 2 | 37 | 3.9E-6 | IPR013210 |
| Pfam | PF13516 | Leucine Rich repeat | 207 | 224 | 0.72 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 591 | 885 | 6.29E-73 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 49 | 345 | 3.16E-64 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 280 | 529 | 3.23E-55 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 580 | 691 | 6.8E-20 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 160 | 267 | 3.9E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 268 | 537 | 1.3E-80 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 692 | 902 | 1.3E-59 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1 | 159 | 4.4E-51 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 441 | 465 | 220.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 369 | 393 | 17.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 112 | 135 | 110.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 616 | 885 | 3.3E-20 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 64 | 88 | 6.9 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 136 | 160 | 4.4 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 327 | 351 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 417 | 440 | 36.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 184 | 208 | 97.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 138 | 160 | 7.54254 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 616 | 887 | 34.449516 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 622 | 644 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 739 | 751 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07180.2 | - | 0 |
| RefSeq | XP_007038488.2 | PREDICTED: LRR receptor-like serine/threonine-protein kinase ERL1 [Theobroma cacao] | 0 |
| Q6XAT2 | LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana OX=3702 GN=ERL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A061G7G8 | ERECTA-like 1 OS=Theobroma cacao OX=3641 GN=TCM_015008 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg14068, jg23990, jg4602, jg7950, jg7951 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8054 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034440 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g033750 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20415, Sbi_jg23364 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17147 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009075 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63595, Sgl68082 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016861, gene:ENSEOMG00000022156 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0013550, CQ.Regalona.r1.2BG0015610 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30181640, pistato.v30260850 |
| Apiaceae | Apium graveolens | 4 | Ag2G01558, Ag2G01938, Ag7G00418, Ag9G02574 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G004100, COCNU_08G006160 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103704912, gene-LOC103721746 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.1302.V1.1, AsparagusV1_03.1303.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri15G21699, Ftri1G09595, Ftri3G24629 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G26330.1, AT5G07180.1, AT5G62230.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10001898m.g.v1.0, Thhalv10003615m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g25430.v2.2, Sp4g06960.v2.2, Sp6g35720.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g024810.2N, BniB02g053710.2N, BniB06g010510.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G2029, Ceq03G2152 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G2101, Cgl03G2294 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g01110, gene.Cymno18g04630 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g05590, gene.Thate05g25620 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.2262, evm.TU.LG07.694 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00013390, Pov_00040854 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G04460, Lb1G07869, Lb2G12716, Lb4G25723 |
| Poaceae | Echinochloa crus-galli | 9 | AH06.497, AH06.682, AH07.3673, BH06.187, BH06.756, BH07.3483 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_2AG0147880, gene-QOZ80_2BG0203290 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.6HG0620170.1, HORVU.MOREX.r3.7HG0644570.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_025829, gene-QYE76_027423, gene-QYE76_027630 |
| Poaceae | Oryza coarctata | 6 | Oco03G023250, Oco04G023830, Oco11G001430, Oco11G004670 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os02g53720.1, LOC_Os06g03970.1, LOC_Os06g10230.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G295600, gene-BS78_10G022700 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0203053, Pt_Chr0304993, Pt_Chr0405065, Pt_Ctg00141 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G000840, Chr11G020700, Chr11G023880, Chr15G002120 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel6E01G593400, Tel7E01G139500, Tel7E01G326500 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC4AG062720, gene_TRIDC6AG050310 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS4A02G422700.1, TraesCS6A02G336300.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb256740_P004, Zm00001eb278640_P001 ... |
| Poaceae | Zoysia japonica | 6 | nbis-gene-34988, nbis-gene-40011, nbis-gene-40299 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g17273, Zma_g29034, Zma_g29298, Zma_g31281, Zma_g31537 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.846, evm.TU.LG15.88 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc07g02910, gene.Posoc08g04520 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_10_RagTag.654, evm.TU.Scaffold_4_RagTag.1093 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12606, nbisL1-mrna-25861 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-15597, nbisL1-mrna-18568, nbisL1-mrna-7054 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-12871, nbisL1-mrna-12872, nbisL1-mrna-1338 ... |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000008l.700, evm.TU.utg000010l.326 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00000131, Maker00008771, Maker00015066 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-18292, nbisL1-mrna-2052, nbisL1-mrna-540 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-8056, nbisL1-mrna-8944, nbisL1-mrna-9406 |
| Salicaceae | Populus euphratica | 5 | populus_peu04947, populus_peu04948, populus_peu29180 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132631775, gene-LOC132635992 |
| Solanaceae | Solanum chilense | 2 | SOLCI004318000, SOLCI006698600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107014834, gene-LOC107028570 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_13363, gene_5183 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G1946, TC11G1493 |
| Zosteraceae | Zostera marina | 4 | Zosma01g09160.v3.1, Zosma02g09020.v3.1, Zosma03g25670.v3.1 ... |