Basic Information
Locus ID:
TC06G1729
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 64767131 | 64782073 | + | TC06G1729 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.82 | 48,561.09 Da | 31.20 | 76.44 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF11715 | Nucleoporin Nup120/160 | 289 | 376 | 1.5E-4 | - |
| Pfam | PF18044 | CCCH-type zinc finger | 127 | 147 | 2.6E-8 | IPR041367 |
| Pfam | PF00400 | WD domain, G-beta repeat | 157 | 193 | 5.5E-6 | IPR001680 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 123 | 148 | 1.54E-7 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 156 | 445 | 1.1E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 152 | 238 | 3.1E-10 | IPR015943 |
| Gene3D | G3DSA:2.30.30.1190 | - | 121 | 151 | 2.2E-5 | - |
| Gene3D | G3DSA:3.30.1370.210 | - | 14 | 64 | 1.5E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 239 | 450 | 1.7E-32 | IPR015943 |
| SMART | SM00356 | c3hfinal6 | 125 | 149 | 1.3E-6 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 31 | 56 | 0.014 | IPR000571 |
| SMART | SM00320 | WD40_4 | 358 | 401 | 4.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 233 | 270 | 4.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 154 | 193 | 8.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 277 | 314 | 0.0031 | IPR001680 |
| SMART | SM00320 | WD40_4 | 317 | 354 | 0.0018 | IPR001680 |
| SMART | SM00320 | WD40_4 | 408 | 441 | 40.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 161 | 193 | 11.286501 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 123 | 150 | 15.85406 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 284 | 317 | 9.651964 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 284 | 323 | 12.680634 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 31 | 57 | 10.11732 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 161 | 202 | 14.251289 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 301 | 315 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 341 | 355 | 5.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 301 | 315 | 5.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 180 | 194 | 5.0E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 85 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_052185440.1 | zinc finger CCCH domain-containing protein 48-like [Diospyros lotus] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A1VD35 | Zinc finger CCCH domain-containing protein 48 OS=Morella rubra OX=262757 GN=CJ030_MR6G019847 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology