Basic Information
Locus ID:
TC06G1662
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 61522004 | 61536362 | - | TC06G1662 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 57,908.84 Da | 51.10 | 88.56 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 49 | 132 | 1.8E-17 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 229 | 258 | 9.8E-6 | IPR002110 |
| Pfam | PF13857 | Ankyrin repeats (many copies) | 184 | 225 | 2.2E-6 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 282 | 4.98E-48 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 320 | 382 | 9.32E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 313 | 385 | 1.2E-7 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 155 | 278 | 1.5E-21 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 4 | 150 | 3.8E-32 | IPR036770 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 1.8E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 143 | 1.7 | IPR002110 |
| SMART | SM00248 | ANK_2a | 228 | 260 | 9.8E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 185 | 214 | 2.6E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.092 | IPR002110 |
| SMART | SM00184 | ring_2 | 326 | 375 | 0.0081 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 9.59106 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 228 | 260 | 11.48747 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.416153 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 326 | 376 | 9.700961 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 9.569101 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 185 | 213 | 10.391575 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.53241 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 185 | 217 | 11.00669 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 228 | 255 | 11.107922 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 341 | 350 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 487 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_010693474.1 | E3 ubiquitin-protein ligase XBAT33 [Beta vulgaris subsp. vulgaris] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | D7TMU6 | RING-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_16s0100g00690 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology