Basic Information
Locus ID:
TC06G1541
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 57073573 | 57078172 | - | TC06G1541 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.62 | 36,143.71 Da | 44.81 | 69.31 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 169 | 297 | 3.69178E-65 | - |
| CDD | cd16571 | RING-HC_SIAHs | 53 | 91 | 1.40489E-13 | - |
| Pfam | PF03145 | Seven in absentia protein family | 97 | 296 | 3.4E-78 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 108 | 299 | 4.64E-48 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 48 | 95 | 3.53E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 32 | 107 | 5.1E-7 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 108 | 163 | 1.1E-16 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 164 | 296 | 1.1E-37 | IPR008974 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 108 | 168 | 13.963663 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 55 | 91 | 9.494419 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_010671441.1 | E3 ubiquitin-protein ligase SINAT5 [Beta vulgaris subsp. vulgaris] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P6SNW2 | RING-type E3 ubiquitin transferase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0380621 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology