Basic Information
Locus ID:
TC06G1420
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 50686395 | 50704467 | - | TC06G1420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 57,813.66 Da | 48.31 | 83.48 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 337 | 514 | 3.99415E-116 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 336 | 443 | 3.8E-18 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 15 | 104 | 9.3E-14 | IPR015063 |
| SUPERFAMILY | SSF140856 | USP8 N-terminal domain-like | 20 | 110 | 3.01E-5 | - |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 339 | 470 | 1.44E-19 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 8 | 124 | 1.3E-32 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 325 | 514 | 2.2E-71 | - |
| SMART | SM00232 | pad1_6 | 339 | 467 | 4.6E-16 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 340 | 470 | 28.422775 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 313 | 334 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_021750517.1 | AMSH-like ubiquitin thioesterase 3 [Chenopodium quinoa] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5B6ZSV4 | Putative AMSH-like ubiquitin thioesterase 3 OS=Davidia involucrata OX=16924 GN=Din_016870 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology