Basic Information
Locus ID:
TC06G1399
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 49577007 | 49595077 | + | TC06G1399 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 65,414.86 Da | 62.20 | 65.28 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 124 | 174 | 1.932E-12 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 274 | 320 | 3.3E-8 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 193 | 255 | 8.1E-13 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 193 | 262 | 6.36E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 274 | 322 | 3.83E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 120 | 202 | 3.85E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 117 | 204 | 1.3E-16 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 251 | 505 | 3.0E-82 | - |
| SMART | SM00647 | ibrneu5 | 193 | 255 | 5.7E-21 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 264 | 329 | 0.051 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 120 | 333 | 48.378296 | IPR044066 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 538 | 567 | 8.038557 | IPR001876 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 304 | 313 | - | IPR017907 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 542 | 561 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| Coils | Coil | Coil | 334 | 354 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_010671821.1 | probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9A7G8 | RBR-type E3 ubiquitin transferase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology