halophFGD

Basic Information

Locus ID: TC06G1268

Species & Taxonomic ID: Tamarix chinensis & 189791

Genome Assembly: GCA_030549775.1

Description: metal tolerance protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	42959006	42961027	-	TC06G1268

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.93	48,174.04 Da	51.44	107.05	0.03

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01545	Cation efflux family	140	330	2.2E-25	IPR002524
Pfam	PF16916	Dimerisation domain of Zinc Transporter	336	411	2.4E-11	IPR027470
SUPERFAMILY	SSF161111	Cation efflux protein transmembrane domain-like	132	332	1.44E-37	IPR027469
SUPERFAMILY	SSF160240	Cation efflux protein cytoplasmic domain-like	334	411	6.28E-15	IPR036837
Gene3D	G3DSA:3.30.70.1350	Cation efflux protein, cytoplasmic domain	338	427	1.2E-15	IPR036837
Gene3D	G3DSA:1.20.1510.10	Cation efflux protein transmembrane domain	133	330	4.9E-38	IPR027469
TIGRFAM	TIGR01297	CDF: cation diffusion facilitator family transporter	134	411	3.8E-31	IPR002524

Gene Ontology

Biological Process:

GO:0006812 (monoatomic cation transport) GO:0055085 (transmembrane transport)

Molecular Function:

GO:0008324 (monoatomic cation transmembrane transporter activity)

Cellular Component:

GO:0016020 (membrane)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G58060.1	Cation efflux family protein.
RefSeq	XP_010693869.1	metal tolerance protein 4 [Beta vulgaris subsp. vulgaris]
Swiss-Prot	Q10PP8	Metal tolerance protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=MTP4 PE=2 SV=1
TrEMBL	A0A2R6QGV6	Metal tolerance protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc18204 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg20556, jg21712, jg38137, jg38515, jg4433
Aizoaceae	Mesembryanthemum crystallinum	4	gene_12058, gene_12767, gene_12936, gene_19116
Amaranthaceae	Atriplex hortensis	4	Ah004891, Ah021438, Ah033407, Ah035921
Amaranthaceae	Beta vulgaris	2	BVRB_2g037080, BVRB_4g071530
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg18030, Sbi_jg20875, Sbi_jg22901, Sbi_jg39872 ... Sbi_jg59169, Sbi_jg62660, Sbi_jg63469
Amaranthaceae	Salicornia europaea	4	Seu_jg1259, Seu_jg14456, Seu_jg16762, Seu_jg23432
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00009370, GOSA_00012766, GOSA_00014217, GOSA_00014370
Amaranthaceae	Suaeda glauca	9	Sgl02574, Sgl07729, Sgl12339, Sgl17622, Sgl24329, Sgl29501 ... Sgl62176, Sgl62206, Sgl66737
Amaranthaceae	Chenopodium album	13	gene:ENSEOMG00000010026, gene:ENSEOMG00000016230 ... gene:ENSEOMG00000016557, gene:ENSEOMG00000017659, gene:ENSEOMG00000017928, gene:ENSEOMG00000018709, gene:ENSEOMG00000027028, gene:ENSEOMG00000030476, gene:ENSEOMG00000033168, gene:ENSEOMG00000043542, gene:ENSEOMG00000044322, gene:ENSEOMG00000046777, gene:ENSEOMG00000050982
Amaranthaceae	Chenopodium quinoa	8	CQ.Regalona.r1.1AG0022910, CQ.Regalona.r1.1BG0001340 ... CQ.Regalona.r1.2AG0010890, CQ.Regalona.r1.2BG0012270, CQ.Regalona.r1.3AG0019320, CQ.Regalona.r1.3BG0020020, CQ.Regalona.r1.4AG0000570, CQ.Regalona.r1.4BG0000660
Anacardiaceae	Pistacia vera	5	pistato.v30054330, pistato.v30172100, pistato.v30188150 ... pistato.v30188160, pistato.v30278440
Apiaceae	Apium graveolens	5	Ag10G01093, Ag10G02958, Ag3G02327, Ag4G02002, Ag5G02659
Arecaceae	Cocos nucifera	7	COCNU_03G003500, COCNU_03G009060, COCNU_04G002340 ... COCNU_04G014930, COCNU_09G000620, COCNU_12G007480, scaffold003874G000050
Arecaceae	Phoenix dactylifera	6	gene-LOC103705933, gene-LOC103708630, gene-LOC103710582 ... gene-LOC103712907, gene-LOC103712998, gene-LOC103719574
Asparagaceae	Asparagus officinalis	6	AsparagusV1_01.2999.V1.1, AsparagusV1_02.190.V1.1 ... AsparagusV1_03.1273.V1.1, AsparagusV1_05.602.V1.1, AsparagusV1_06.476.V1.1, AsparagusV1_08.3462.V1.1
Asteraceae	Flaveria trinervia	6	Ftri14G28191, Ftri15G13790, Ftri16G19849, Ftri17G27077 ... Ftri2G12028, Ftri7G15206
Brassicaceae	Arabidopsis thaliana	4	AT1G16310.1, AT1G79520.2, AT2G39450.1, AT3G58060.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10006008m.g.v1.0, Thhalv10009396m.g.v1.0 ... Thhalv10016762m.g.v1.0, Thhalv10018658m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g14500.v2.2, Sp4g08160.v2.2, Sp5g04660.v2.2 ... Sp5g34570.v2.2
Brassicaceae	Brassica nigra	9	BniB01g005740.2N, BniB03g026870.2N, BniB06g005400.2N ... BniB06g041640.2N, BniB06g055260.2N, BniB06g063610.2N, BniB06g067870.2N, BniB06g067880.2N, BniB08g072770.2N
Casuarinaceae	Casuarina equisetifolia	8	Ceq01G1719, Ceq01G1720, Ceq01G1721, Ceq01G1722, Ceq02G0712 ... Ceq05G2182, Ceq05G2183, Ceq05G2184
Casuarinaceae	Casuarina glauca	7	Cgl01G1875, Cgl01G1876, Cgl01G1877, Cgl01G1878, Cgl02G0721 ... Cgl05G2278, Cgl05G2279
Cymodoceaceae	Cymodocea nodosa	5	gene.Cymno03g10720, gene.Cymno04g15600, gene.Cymno05g16210 ... gene.Cymno09g01060, gene.Cymno09g09450
Dunaliellaceae	Dunaliella salina	1	Dusal.0199s00009.v1.0
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate01g33560, gene.Thate03g01460, gene.Thate05g05000 ... gene.Thate05g25550
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.2959, evm.TU.LG02.1548, evm.TU.LG09.456
Plantaginaceae	Plantago ovata	4	Pov_00006180, Pov_00006835, Pov_00011551, Pov_00038139
Plumbaginaceae	Limonium bicolor	9	Lb1G04699, Lb1G05350, Lb1G05354, Lb2G12400, Lb2G12417 ... Lb3G18986, Lb3G20333, Lb4G24776, Lb7G33199
Poaceae	Echinochloa crus-galli	12	AH01.4424, AH02.3808, AH02.804, AH07.3657, BH02.3817 ... BH02.807, BH07.3466, BH07.4128, CH01.5029, CH02.913, CH07.3541, Contig192.60
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_1AG0008290, gene-QOZ80_1AG0039190 ... gene-QOZ80_1BG0057070, gene-QOZ80_1BG0089210, gene-QOZ80_2AG0147720, gene-QOZ80_2BG0203150, gene-QOZ80_3AG0239950, gene-QOZ80_3BG0288040, gene-QOZ80_5AG0370420, gene-QOZ80_5BG0417950
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.1HG0073140.1, HORVU.MOREX.r3.3HG0222000.2 ... HORVU.MOREX.r3.3HG0303160.1, HORVU.MOREX.r3.4HG0393950.1, HORVU.MOREX.r3.6HG0617950.1
Poaceae	Lolium multiflorum	5	gene-QYE76_014315, gene-QYE76_025868, gene-QYE76_048862 ... gene-QYE76_049054, gene-QYE76_055497
Poaceae	Oryza coarctata	9	Oco01G001180, Oco01G024410, Oco02G001200, Oco02G025270 ... Oco04G023700, Oco05G007000, Oco06G007250, Oco09G011580, Oco10G011550
Poaceae	Oryza sativa	5	LOC_Os01g03914.1, LOC_Os01g62070.1, LOC_Os02g53490.1 ... LOC_Os03g12530.1, LOC_Os05g38670.1
Poaceae	Paspalum vaginatum	6	gene-BS78_01G427600, gene-BS78_03G078200, gene-BS78_K132400 ... gene-BS78_03G078600, gene-BS78_03G329500, gene-BS78_04G293600
Poaceae	Puccinellia tenuiflora	10	Pt_Chr0101911, Pt_Chr0101938, Pt_Chr0207027, Pt_Chr0207033 ... Pt_Chr0304947, Pt_Chr0304969, Pt_Chr0504712, Pt_Chr0504728, Pt_Chr0602061, Pt_Chr0602072
Poaceae	Sporobolus alterniflorus	19	Chr01G019050, Chr01G028680, Chr02G005230, Chr02G024320 ... Chr03G003520, Chr03G019660, Chr05G002250, Chr05G028150, Chr06G000930, Chr07G000760, Chr08G001480, Chr08G022440, Chr09G018420, Chr12G010780, Chr13G002830, Chr15G002270, Chr15G019190, Chr22G006350, Chr30G009900
Poaceae	Thinopyrum elongatum	6	Tel1E01G465600, Tel3E01G074100, Tel3E01G570200 ... Tel4E01G402500, Tel6E01G570900, Tel7E01G1003500
Poaceae	Triticum dicoccoides	10	gene_TRIDC1AG042850, gene_TRIDC1BG048680 ... gene_TRIDC3AG004740, gene_TRIDC3AG051160, gene_TRIDC3BG005650, gene_TRIDC3BG057740, gene_TRIDC4AG009740, gene_TRIDC4BG041050, gene_TRIDC6AG048390, gene_TRIDC6BG056550
Poaceae	Triticum aestivum	15	TraesCS1A02G287100.1, TraesCS1B02G296500.1 ... TraesCS1D02G286000.1, TraesCS3A02G042600.1, TraesCS3A02G355500.2, TraesCS3B02G040900.3, TraesCS3B02G388400.1, TraesCS3D02G038000.3, TraesCS3D02G349500.1, TraesCS4A02G077100.1, TraesCS4B02G233300.1, TraesCS4D02G234400.1, TraesCS6A02G322500.1, TraesCS6B02G353300.1, TraesCS6D02G302400.1
Poaceae	Zea mays	4	Zm00001eb009890_P003, Zm00001eb125400_P002 ... Zm00001eb148620_P001, Zm00001eb256540_P003
Poaceae	Zoysia japonica	7	nbis-gene-11473, nbis-gene-11949, nbis-gene-14160 ... nbis-gene-2366, nbis-gene-3954, nbis-gene-40032, nbis-gene-7068
Poaceae	Zoysia macrostachya	9	Zma_g11499, Zma_g1709, Zma_g17262, Zma_g27055, Zma_g27056 ... Zma_g4076, Zma_g7538, Zma_g8958, Zma_g9898
Portulacaceae	Portulaca oleracea	4	evm.TU.LG04.2452, evm.TU.LG11.1239, evm.TU.LG18.1133 ... evm.TU.LG20.738
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g34900, gene.Posoc02g25510, gene.Posoc04g01740 ... gene.Posoc08g04630
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_11_RagTag.438, evm.TU.Scaffold_4_RagTag.1684 ... evm.TU.Scaffold_8_RagTag.59, evm.TU.Scaffold_9_RagTag.25, evm.TU.Scaffold_9_RagTag.26
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-10297, nbisL1-mrna-22180, nbisL1-mrna-22181 ... nbisL1-mrna-22182, nbisL1-mrna-26051
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-1030, nbisL1-mrna-10764, nbisL1-mrna-13147 ... nbisL1-mrna-1645, nbisL1-mrna-17969
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-14156, nbisL1-mrna-17705, nbisL1-mrna-4498 ... nbisL1-mrna-7660, nbisL1-mrna-7662
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000003l.15, evm.TU.utg000003l.16 ... evm.TU.utg000005l.101, evm.TU.utg000008l.939, evm.TU.utg000018l.948
Rhizophoraceae	Kandelia obovata	5	Maker00001105, Maker00003191, Maker00010125, Maker00017532 ... Maker00017576
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-2114, nbisL1-mrna-3063, nbisL1-mrna-509 ... nbisL1-mrna-6640, nbisL1-mrna-6641
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-11514, nbisL1-mrna-21568, nbisL1-mrna-21570 ... nbisL1-mrna-9491
Salicaceae	Populus euphratica	10	populus_peu04407, populus_peu04408, populus_peu04410 ... populus_peu06375, populus_peu06694, populus_peu20206, populus_peu20583, populus_peu20584, populus_peu20585, populus_peu35232
Solanaceae	Lycium barbarum	5	gene-LOC132604612, gene-LOC132626029, gene-LOC132627427 ... gene-LOC132636257, gene-LOC132640168
Solanaceae	Solanum chilense	6	SOLCI000047200, SOLCI000211300, SOLCI002737100 ... SOLCI003315100, SOLCI004430400, SOLCI007291900
Solanaceae	Solanum pennellii	6	gene-LOC107006763, gene-LOC107006784, gene-LOC107007282 ... gene-LOC107013977, gene-LOC107020760, gene-LOC107032367
Tamaricaceae	Reaumuria soongarica	5	gene_4661, gene_4849, gene_4896, gene_4975, gene_5325
Tamaricaceae	Tamarix chinensis	4	TC02G3436, TC02G3623, TC02G3781, TC06G1268
Zosteraceae	Zostera marina	3	Zosma01g20960.v3.1, Zosma02g21240.v3.1, Zosma06g13340.v3.1