Basic Information
Locus ID:
TC06G1181
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 39010516 | 39050342 | + | TC06G1181 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 105,078.09 Da | 44.94 | 84.72 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 768 | 923 | 1.8127E-54 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 324 | 922 | 1.0E-85 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 36 | 139 | 1.3E-20 | IPR006615 |
| SUPERFAMILY | SSF143791 | DUSP-like | 13 | 139 | 9.42E-26 | IPR035927 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 322 | 925 | 3.34E-107 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 152 | 237 | 8.7E-13 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 312 | 533 | 3.1E-67 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 5 | 151 | 2.9E-34 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 692 | 932 | 2.4E-54 | - |
| SMART | SM00695 | dusp | 32 | 141 | 8.1E-24 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 13 | 138 | 17.532408 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 324 | 925 | 56.740448 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 867 | 884 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 325 | 340 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_028104515.1 | ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Camellia sinensis] | 0 |
| O22207 | Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J5BQX7 | Ubiquitin carboxyl-terminal hydrolase OS=Nyssa sinensis OX=561372 GN=F0562_021653 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology