Basic Information
Locus ID:
TC06G0834
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
60S ribosomal Protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 24777910 | 24779974 | - | TC06G0834 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.24 | 28,922.69 Da | 39.69 | 84.36 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01433 | Ribosomal_L16_L10e | 59 | 184 | 2.76393E-44 | IPR016180 |
| Pfam | PF00252 | Ribosomal protein L16p/L10e | 30 | 184 | 3.0E-35 | IPR016180 |
| SUPERFAMILY | SSF54686 | Ribosomal protein L16p/L10e | 23 | 188 | 4.32E-73 | IPR036920 |
| Gene3D | G3DSA:3.30.60.300 | - | 214 | 253 | 7.1E-15 | - |
| Gene3D | G3DSA:3.90.1170.10 | Ribosomal protein L10e/L16 | 20 | 191 | 1.4E-91 | IPR036920 |
| TIGRFAM | TIGR00279 | uL16_euk_arch: ribosomal protein uL16 | 22 | 189 | 2.3E-73 | IPR001197 |
| ProSitePatterns | PS01257 | Ribosomal protein L10e signature. | 126 | 147 | - | IPR018255 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G26910.1 | Ribosomal protein L16p/L10e family protein. | 0 |
| RefSeq | XP_028782304.1 | 60S ribosomal protein L10-like isoform X1 [Prosopis alba] | 0 |
| Q9SPB3 | Large ribosomal subunit protein uL16 OS=Vitis riparia OX=96939 GN=RPL10 PE=2 SV=1 | 0 | |
| TrEMBL | A0A834WBP8 | 60S ribosomal protein L10 OS=Senna tora OX=362788 GN=G2W53_030546 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 7 | jg24978, jg3087, jg31479, jg33138, jg35704, jg4071, jg8419 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_21191, gene_5244 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah031383, Ah035994 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_7g157900, BVRB_7g157910 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg20475, Sbi_jg2257, Sbi_jg23295, Sbi_jg34244 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg17090, Seu_jg2498 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005983, GOSA_00014184 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl20749, Sgl24808, Sgl26131, Sgl29956, Sgl71003, Sgl74595 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000008125, gene:ENSEOMG00000019396 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0022530, CQ.Regalona.r1.1BG0001700 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30131770, pistato.v30178280 |
| Apiaceae | Apium graveolens | 2 | Ag2G01238, Ag3G01866 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702162, gene-LOC103722181 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.579.V1.1, AsparagusV1_08.3322.V1.1 |
| Asteraceae | Flaveria trinervia | 5 | Ftri10G12676, Ftri11G29204, Ftri12G05425, Ftri9G20966 ... |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G14320.1, AT1G26910.1, AT1G66580.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008763m.g.v1.0, Thhalv10019112m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g12670.v2.2, Sp1g21870.v2.2, Sp5g24860.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB02g009370.2N, BniB03g005950.2N, BniB03g041220.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G2470 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G2716 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g11800, gene.Cymno05g12890 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0318s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate02g36800, gene.Thate05g04400, gene.Thate07g00540 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-3206, nbisL1-mrna-4138 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1654 |
| Plantaginaceae | Plantago ovata | 5 | Pov_00024824, Pov_00024826, Pov_00029216, Pov_00036719 ... |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G04520, Lb2G15317 |
| Poaceae | Echinochloa crus-galli | 12 | AH01.3750, AH05.1094, AH05.1108, AH07.971, BH01.4097 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_1AG0027850, gene-QOZ80_1BG0078020 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0026070.1, HORVU.MOREX.r3.4HG0345200.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_009812, gene-QYE76_064275 |
| Poaceae | Oryza coarctata | 5 | Oco05G012730, Oco09G003260, Oco10G003220, Oco15G003360 ... |
| Poaceae | Oryza sativa | 2 | LOC_Os05g07700.1, LOC_Os11g11390.1 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_01G163100, gene-BS78_01G364700 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0306526, Pt_Chr0501700, Pt_Chr0501745 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G007860, Chr02G013350, Chr03G012990, Chr04G010580 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel1E01G209500, Tel2E01G1012100, Tel4E01G174000 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1AG014450, gene_TRIDC1BG019620 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS1A02G112500.1, TraesCS1B02G132700.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb049570_P004, Zm00001eb150930_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-15804, nbis-gene-3377, nbis-gene-51722 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g3034, Zma_g3693, Zma_g726, Zma_g8392 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG03.873, evm.TU.LG07.384, evm.TU.LG07.481 ... |
| Posidoniaceae | Posidonia oceanica | 4 | gene.Posoc01g27450, gene.Posoc01g27460, gene.Posoc01g27470 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.42613.1, evm.TU.Scaffold_16_RagTag.702 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14004, nbisL1-mrna-24873 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-3352, nbisL1-mrna-3353 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-19107, nbisL1-mrna-19108 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000022l.63, evm.TU.utg000022l.146 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016201 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-148, nbisL1-mrna-149, nbisL1-mrna-23164 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10405, nbisL1-mrna-10406 |
| Salicaceae | Populus euphratica | 2 | populus_peu14521, populus_peu17033 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132602810, gene-LOC132605765, gene-LOC132605766 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI001735900, SOLCI002583300 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107023517, gene-LOC107023542, gene-LOC107023544 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.6391_chr04_-, gene_1514, gene_17002 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2640, TC06G0834 |
| Zosteraceae | Zostera marina | 1 | Zosma02g17340.v3.1 |