Basic Information
Locus ID:
TC06G0813
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 23978451 | 23981893 | + | TC06G0813 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 68,065.53 Da | 55.84 | 95.73 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 28 | 68 | 9.9E-20 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 88 | 133 | 1.3E-24 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 87 | 555 | 1.2E-31 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 23 | 62 | 1.83E-6 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 26 | 66 | 9.3E-19 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 67 | 597 | 5.8E-178 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 392 | 416 | 2.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 452 | 475 | 10.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 334 | 357 | 170.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 176 | 195 | 720.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 309 | 333 | 75.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 30 | 71 | 9.7E-5 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 150 | 175 | 54.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 501 | 525 | 540.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 125 | 149 | 110.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_021773054.1 | protein TRANSPORT INHIBITOR RESPONSE 1-like [Chenopodium quinoa] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803KPI2 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology