Basic Information
Locus ID:
TC06G0777
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 22791353 | 22792135 | + | TC06G0777 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.55 | 29,224.87 Da | 47.93 | 79.46 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 101 | 144 | 1.5E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 73 | 150 | 5.78E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 59 | 150 | 2.9E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 102 | 143 | 0.0024 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 102 | 144 | 11.471321 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 178 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 176 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 260 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05200.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6). | 0 |
| RefSeq | XP_022895963.1 | E3 ubiquitin-protein ligase ATL31-like [Olea europaea var. sylvestris] | 0 |
| Q8RXX9 | E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7J8PPA3 | RING-type domain-containing protein (Fragment) OS=Gossypium raimondii OX=29730 GN=Gorai_019764 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4962 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2120 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004294 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24519, Sbi_jg8370 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11677 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001703 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51300, Sgl56706 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000022051, gene:ENSEOMG00000025055 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5AG0002260, CQ.Regalona.r1.5BG0002380 ... |
| Apiaceae | Apium graveolens | 2 | Ag7G00514, Ag8G01115 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC113462558 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G15963, Ftri3G04090 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G35420.1, AT4G17920.1, AT5G46650.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10001206m.g.v1.0, Thhalv10017563m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g11480.v2.2, Sp4g17640.v2.2, Sp7g16180.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g009100.2N, BniB02g063310.2N, BniB02g072350.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0372 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0370 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g07200 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.793 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003004 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g00440 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.493 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-17815, nbisL1-mrna-22761 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12962, nbisL1-mrna-8341 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-22128, nbisL1-mrna-8210 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000007l.39, add.evm.TU.utg000022l.118 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-18057, nbisL1-mrna-23324 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10573, nbisL1-mrna-6407 |
| Salicaceae | Populus euphratica | 4 | populus_peu03192, populus_peu03195, populus_peu34048 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609722, gene-LOC132638217 |
| Solanaceae | Solanum chilense | 2 | SOLCI002820000, SOLCI005766600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028299 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2920 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G0777, TC09G0486 |
| Zosteraceae | Zostera marina | 1 | Zosma02g02810.v3.1 |