Basic Information
Locus ID:
TC06G0773
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
NEP1-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 22672188 | 22673189 | + | TC06G0773 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 36,937.68 Da | 46.93 | 87.57 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 291 | 330 | 9.9E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 288 | 330 | 1.72E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 251 | 333 | 8.5E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 291 | 331 | 4.2E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 291 | 329 | 10.969719 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 214 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 161 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17730.1 | NEP-interacting protein 2. Intrinsic thylakoid membrane protein that fixes RPOTmp on the stromal side of the thylakoid membrane. | 0 |
| RefSeq | XP_042409956.1 | RING-H2 finger protein ATL5-like [Zingiber officinale] | 0 |
| Q08DI6 | RING finger protein 11 OS=Bos taurus OX=9913 GN=RNF11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8J5KQG6 | RING-type E3 ubiquitin transferase OS=Zingiber officinale OX=94328 GN=ZIOFF_050543 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for TC06G0773.