Basic Information
Locus ID:
TC06G0772
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 22597751 | 22598392 | + | TC06G0772 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 23,808.31 Da | 50.61 | 89.39 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17123 | RING-like zinc finger | 169 | 197 | 1.2E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 168 | 213 | 5.89E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 214 | 7.6E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 169 | 210 | 1.6E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 169 | 211 | 11.869652 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G09120.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015885255.1 | RING-H2 finger protein ATL11-like [Ziziphus jujuba var. spinosa] | 0 |
| Q9M0R5 | Putative RING-H2 finger protein ATL36 OS=Arabidopsis thaliana OX=3702 GN=ATL36 PE=3 SV=1 | 0 | |
| TrEMBL | A0A7C8YGN6 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12012 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005915 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17023, Sbi_jg61572 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg301 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008349 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl24613, Sgl29761, Sgl29766 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000011364 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0009290, CQ.Regalona.r1.4BG0009420 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G0771, TC06G0772 |