Basic Information
Locus ID:
TC06G0601
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 17601526 | 17606677 | + | TC06G0601 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.07 | 38,540.45 Da | 50.64 | 67.91 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 268 | 332 | 1.20493E-17 | - |
| CDD | cd16872 | ARID_HMGB9-like | 52 | 137 | 5.46029E-44 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 54 | 137 | 5.9E-18 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 268 | 335 | 9.9E-12 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 261 | 337 | 1.31E-17 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 50 | 145 | 1.83E-28 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 253 | 340 | 2.0E-17 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 41 | 150 | 1.1E-28 | IPR036431 |
| SMART | SM01014 | ARID_2 | 47 | 137 | 2.6E-27 | - |
| SMART | SM00501 | bright_3 | 51 | 142 | 1.6E-31 | IPR001606 |
| SMART | SM00398 | hmgende2 | 267 | 336 | 1.6E-13 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 50 | 141 | 25.957327 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 268 | 335 | 13.417564 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 157 | 191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 157 | 172 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13350.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_030447021.1 | high mobility group B protein 10 isoform X1 [Syzygium oleosum] | 0 |
| Q9LTT3 | High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B8QRA2 | high mobility group B protein 10-like OS=Rhodamnia argentea OX=178133 GN=LOC115754154 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology