Basic Information
Locus ID:
TC06G0433
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 13330100 | 13336708 | + | TC06G0433 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.89 | 79,506.34 Da | 34.34 | 93.62 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 16 | 315 | 4.25182E-154 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 332 | 632 | 1.89231E-147 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 21 | 309 | 3.5E-5 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 337 | 627 | 2.6E-29 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 15 | 314 | 3.14E-41 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 332 | 633 | 1.62E-42 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 15 | 314 | 1.2E-32 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 330 | 632 | 3.2E-44 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 16 | 316 | 36.058994 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 332 | 633 | 34.012726 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_002529027.2 | glycerophosphodiester phosphodiesterase GDPDL3 [Ricinus communis] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A835DML9 | glycerophosphodiester phosphodiesterase OS=Tetracentron sinense OX=13715 GN=HHK36_005747 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology