Basic Information
Locus ID:
TC06G0390
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Small ubiquitin-related modifier
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 11967774 | 11971322 | - | TC06G0390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 11,128.50 Da | 55.66 | 76.87 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16116 | Ubl_Smt3_like | 18 | 90 | 1.11318E-46 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 19 | 89 | 2.2E-23 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 13 | 94 | 2.53E-25 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 17 | 97 | 1.7E-37 | - |
| SMART | SM00213 | ubq_7 | 19 | 90 | 1.5E-12 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 17 | 94 | 17.03846 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26840.1 | small ubiquitin-like modifier 1. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. | 0 |
| RefSeq | XP_047054786.1 | small ubiquitin-related modifier 1-like [Lolium rigidum] | 0 |
| P55852 | Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana OX=3702 GN=SUMO1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LY12 | Small ubiquitin-related modifier OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology