Basic Information
Locus ID:
TC06G0246
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Short Name:
UBC5
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 6917420 | 6932117 | - | TC06G0246 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 30,595.75 Da | 47.54 | 81.55 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 46 | 182 | 1.35061E-47 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 49 | 181 | 6.5E-38 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 43 | 187 | 1.57E-44 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 34 | 199 | 5.9E-47 | IPR016135 |
| SMART | SM00212 | ubc_7 | 43 | 187 | 4.4E-44 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 39 | 187 | 39.54097 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 112 | 128 | - | IPR023313 |
| Coils | Coil | Coil | 164 | 184 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63800.1 | ubiquitin-conjugating enzyme 5. | 0 |
| RefSeq | XP_016708381.1 | ubiquitin-conjugating enzyme E2 4 [Gossypium hirsutum] | 0 |
| P42749 | Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana OX=3702 GN=UBC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1U8JCF7 | ubiquitin-conjugating enzyme E2 4 OS=Gossypium hirsutum OX=3635 GN=LOC107904483 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology