Basic Information
Locus ID:
TC06G0156
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 4378228 | 4400987 | + | TC06G0156 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 103,543.85 Da | 50.97 | 80.23 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 755 | 911 | 6.53397E-58 | - |
| Pfam | PF06337 | DUSP domain | 56 | 157 | 2.1E-22 | IPR006615 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 332 | 910 | 6.1E-86 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 329 | 913 | 3.53E-111 | IPR038765 |
| SUPERFAMILY | SSF143791 | DUSP-like | 32 | 157 | 2.22E-27 | IPR035927 |
| Gene3D | G3DSA:3.30.2230.10 | - | 21 | 169 | 1.1E-33 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 633 | 916 | 2.1E-58 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 317 | 551 | 1.2E-66 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 170 | 256 | 1.6E-10 | - |
| SMART | SM00695 | dusp | 51 | 160 | 3.0E-28 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 32 | 157 | 19.061588 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 331 | 913 | 59.444168 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 332 | 347 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 855 | 872 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 666 | 687 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10570.1 | ubiquitin-specific protease 9. encodes a ubiquitin-specific protease family member, UBP9. | 0 |
| RefSeq | XP_010660239.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 [Vitis vinifera] | 0 |
| Q9ZSB5 | Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana OX=3702 GN=UBP10 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C8YSW4 | Ubiquitin carboxyl-terminal hydrolase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology