Basic Information
Locus ID:
TC06G0110
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 2986927 | 3002526 | - | TC06G0110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.95 | 38,467.43 Da | 50.56 | 67.52 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 75 | 113 | 2.63043E-14 | - |
| CDD | cd03829 | Sina | 191 | 319 | 1.94308E-62 | - |
| Pfam | PF03145 | Seven in absentia protein family | 119 | 318 | 1.8E-78 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 66 | 119 | 2.41E-6 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 130 | 322 | 2.09E-46 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 52 | 129 | 2.1E-6 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 130 | 183 | 2.4E-17 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 184 | 318 | 2.9E-36 | IPR008974 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 130 | 190 | 14.364697 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 77 | 113 | 9.479666 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_030468344.1 | E3 ubiquitin-protein ligase SINAT3 [Syzygium oleosum] | 0 |
| Q8S3N1 | E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana OX=3702 GN=SINAT5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8B8QLN7 | RING-type E3 ubiquitin transferase OS=Rhodamnia argentea OX=178133 GN=LOC115753579 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology