Basic Information
Locus ID:
TC06G0101
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 2804681 | 2806678 | - | TC06G0101 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.07 | 44,718.75 Da | 44.67 | 81.47 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 353 | 396 | 6.4276E-17 | - |
| Pfam | PF13639 | Ring finger domain | 353 | 396 | 7.4E-13 | IPR001841 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 34 | 104 | 3.2E-17 | IPR025287 |
| SUPERFAMILY | SSF57850 | RING/U-box | 348 | 400 | 2.15E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 315 | 400 | 7.9E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 354 | 395 | 3.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 354 | 396 | 12.813844 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010676294.2 | RING-H2 finger protein ATL22 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SKK8 | RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C8YDV5 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology