Basic Information
Locus ID:
TC05G3022
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Short Name:
UBP12
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 109144761 | 109171172 | - | TC05G3022 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 128,996.56 Da | 48.19 | 79.33 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 201 | 504 | 2.45557E-140 | - |
| CDD | cd00121 | MATH | 60 | 183 | 2.27563E-38 | IPR002083 |
| Pfam | PF00917 | MATH domain | 65 | 185 | 6.4E-20 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 603 | 855 | 4.3E-73 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 203 | 429 | 5.8E-28 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 865 | 1076 | 1.6E-57 | IPR029346 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 198 | 530 | 1.0E-76 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 56 | 187 | 3.11E-39 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 781 | 878 | 4.4E-26 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 56 | 199 | 1.0E-49 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 663 | 780 | 3.0E-41 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 200 | 503 | 1.1E-67 | - |
| SMART | SM00061 | math_3 | 60 | 164 | 8.8E-21 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 203 | 502 | 26.970911 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 58 | 183 | 37.957191 | IPR002083 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 204 | 219 | - | IPR018200 |
| Coils | Coil | Coil | 511 | 531 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.2 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_021721291.1 | ubiquitin carboxyl-terminal hydrolase 13-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7C9CRZ2 | ubiquitinyl hydrolase 1 OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology