Basic Information
Locus ID:
TC05G2829
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 104213250 | 104254755 | + | TC05G2829 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 48,460.42 Da | 46.63 | 82.48 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 133 | 434 | 9.42197E-41 | - |
| Pfam | PF08662 | Eukaryotic translation initiation factor eIF2A | 129 | 201 | 2.8E-4 | IPR013979 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 371 | 410 | 1.6E-4 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 127 | 433 | 3.83E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 113 | 435 | 3.1E-69 | IPR015943 |
| SMART | SM00320 | WD40_4 | 214 | 253 | 0.013 | IPR001680 |
| SMART | SM00320 | WD40_4 | 172 | 211 | 4.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 395 | 435 | 0.001 | IPR001680 |
| SMART | SM00320 | WD40_4 | 256 | 302 | 2.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 351 | 392 | 0.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 127 | 167 | 1.1E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 134 | 168 | 12.212779 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 372 | 401 | 9.539323 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 179 | 220 | 8.67045 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 220 | 262 | 9.806668 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 134 | 168 | 10.179234 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 154 | 168 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54520.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_028079388.1 | WD repeat-containing protein 25 [Camellia sinensis] | 0 |
| E9Q349 | WD repeat-containing protein 25 OS=Mus musculus OX=10090 GN=Wdr25 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B7BSK6 | WD_REPEATS_REGION domain-containing protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_041293 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg21455, jg21456 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7386 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah008421, Ah008422 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg18814, Sbi_jg37242, Sbi_jg37245 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5065 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007003 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl22945, Sgl28065 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000007803, gene:ENSEOMG00000042705 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0020960, CQ.Regalona.r1.4BG0021450 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30159840 |
| Apiaceae | Apium graveolens | 3 | Ag4G00888, Ag4G02699, Ag4G02709 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G002250 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706162 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.2153.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G00410 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G54520.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013494m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g16490.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g015890.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1197 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1342 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g10880 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g02310 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9141 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1730 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008982 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G03279, Lb1G03280 |
| Poaceae | Echinochloa crus-galli | 4 | AH05.2174, AH05.2175, BH05.2333, CH05.2388 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0311820, gene-QOZ80_4BG0343130 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0105610.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_038383 |
| Poaceae | Oryza coarctata | 1 | Oco04G009250 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g21490.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G055700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0305668, Pt_Ctg00124 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr30G014050 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G140400 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG006810, gene_TRIDC2AG006830 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G061500.1, TraesCS2B02G074700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb118470_P001, Zm00001eb164250_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-8210 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21000 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.1694, evm.TU.LG09.221 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g05770 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.265 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21991 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3222 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7225 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.386 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009604 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6803 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12611 |
| Salicaceae | Populus euphratica | 2 | populus_peu00409, populus_peu00410 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613585 |
| Solanaceae | Solanum chilense | 1 | SOLCI002061300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015944 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13194 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2829 |
| Zosteraceae | Zostera marina | 1 | Zosma15g00170.v3.1 |