Basic Information
Locus ID:
TC05G2736
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 101487912 | 101489234 | - | TC05G2736 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.24 | 48,032.12 Da | 46.28 | 99.39 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 11 | 54 | 1.33814E-22 | - |
| Pfam | PF04564 | U-box domain | 7 | 80 | 3.7E-19 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 82 | 1.41E-25 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 101 | 424 | 4.21E-13 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 96 | 427 | 1.5E-10 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 85 | 5.5E-27 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 10 | 77 | 3.4E-27 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 6 | 84 | 37.649067 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_006430055.1 | E3 ubiquitin-protein ligase PUB22 [Citrus clementina] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067FTF7 | RING-type E3 ubiquitin transferase OS=Citrus sinensis OX=2711 GN=CISIN_1g014913mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology