Basic Information
Locus ID:
TC05G2666
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 99809011 | 99814989 | - | TC05G2666 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.08 | 82,134.09 Da | 42.62 | 93.38 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 42 | 341 | 4.74196E-164 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 358 | 657 | 6.29594E-152 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 363 | 653 | 4.8E-24 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 41 | 340 | 1.12E-40 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 358 | 658 | 4.71E-42 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 41 | 340 | 1.3E-33 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 356 | 657 | 6.7E-47 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 42 | 342 | 34.248211 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 358 | 658 | 35.76667 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_042481490.1 | glycerophosphodiester phosphodiesterase GDPDL3-like isoform X1 [Macadamia integrifolia] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B6Z7R8 | glycerophosphodiester phosphodiesterase OS=Davidia involucrata OX=16924 GN=Din_008554 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology