Basic Information
Locus ID:
TC05G2612
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 98501900 | 98503153 | - | TC05G2612 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 44,093.43 Da | 40.77 | 83.36 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 39 | 133 | 1.5E-5 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 201 | 329 | 2.6E-13 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 185 | 330 | 2.49E-18 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 33 | 178 | 8.37E-17 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 26 | 172 | 2.0E-8 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 173 | 330 | 1.5E-10 | IPR036378 |
| SMART | SM00554 | fasc_3 | 63 | 178 | 2.7 | IPR000782 |
| SMART | SM00554 | fasc_3 | 226 | 330 | 1.9E-16 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 188 | 327 | 12.218557 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 27 | 175 | 11.139742 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 396 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55730.1 | FASCICLIN-like arabinogalactan 1. fasciclin-like arabinogalactan-protein 1 (Fla1) | 0 |
| RefSeq | XP_002267825.1 | PREDICTED: fasciclin-like arabinogalactan protein 1 [Vitis vinifera] | 0 |
| Q9FM65 | Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=FLA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2R6P548 | Fasciclin-like arabinogalactan protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc33391 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology