Basic Information
Locus ID:
TC05G1920
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
G-type lectin S-receptor-like serine threonine-protein kinase SD3-1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 80459544 | 80461367 | - | TC05G1920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.90 | 67,547.05 Da | 41.16 | 77.40 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00028 | B_lectin | 40 | 160 | 6.91413E-24 | IPR001480 |
| Pfam | PF00024 | PAN domain | 340 | 398 | 1.4E-4 | IPR003609 |
| Pfam | PF01453 | D-mannose binding lectin | 86 | 171 | 6.0E-20 | IPR001480 |
| Pfam | PF00954 | S-locus glycoprotein domain | 255 | 313 | 2.1E-9 | IPR000858 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 182 | 282 | 1.83E-9 | IPR036426 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 84 | 212 | 8.51E-23 | IPR036426 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 521 | 606 | 3.37E-12 | IPR011009 |
| Gene3D | G3DSA:2.90.10.10 | - | 159 | 285 | 7.4E-13 | IPR036426 |
| Gene3D | G3DSA:2.90.10.10 | - | 27 | 158 | 8.8E-18 | IPR036426 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 489 | 579 | 2.0E-13 | - |
| Gene3D | G3DSA:3.50.4.10 | Hepatocyte Growth Factor | 331 | 415 | 8.6E-6 | - |
| SMART | SM00108 | blect_4 | 39 | 160 | 4.0E-25 | IPR001480 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 33 | 158 | 14.780786 | IPR001480 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 478 | 607 | 8.48536 | IPR000719 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 334 | 414 | 8.883001 | IPR003609 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 161 | 281 | 8.757874 | IPR001480 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G41890.1 | curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein. | 0 |
| RefSeq | XP_019104220.1 | G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Beta vulgaris subsp. vulgaris] | 0 |
| P93756 | G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 OS=Arabidopsis thaliana OX=3702 GN=SD31 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5B7AYI9 | Non-specific serine/threonine protein kinase (Fragment) OS=Davidia involucrata OX=16924 GN=Din_031251 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg36152 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4666 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah004852, Ah021758 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g061340, BVRB_4g071120 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018400 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl02660, Sgl02661, Sgl02676, Sgl07820, Sgl07821, Sgl07834 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010550, gene:ENSEOMG00000012970 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.3AG0020780, CQ.Regalona.r1.3BG0021590 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30086000 |
| Apiaceae | Apium graveolens | 2 | Ag3G01432, Ag5G02797 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G012200 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103703682, gene-LOC103704599, gene-LOC120109070 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.938.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G08554, Ftri16G26114 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G41890.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016288m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g24160.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g003790.2N, BniB08g053610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1084 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1231 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g20570 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.2469, evm.TU.LG09.398 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1180, evm.TU.LG21.810 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g05470 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1185 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6434 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-580 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4241 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000016l.337 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016913 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10975 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13383 |
| Salicaceae | Populus euphratica | 3 | populus_peu04450, populus_peu10978, populus_peu26117 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132634841 |
| Solanaceae | Solanum chilense | 1 | SOLCI002139600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015303 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12863 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G1919, TC05G1920 |