halophFGD

Basic Information

Locus ID: TC05G1503

Species & Taxonomic ID: Tamarix chinensis & 189791

Genome Assembly: GCA_030549775.1

Description: DA1-related

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	66508879	66512361	-	TC05G1503

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.04	56,805.98 Da	52.29	66.97	-0.52

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd09396	LIM_DA1	139	191	3.81451E-24	-
Pfam	PF12315	Protein DA1	288	496	1.2E-96	IPR022087
Pfam	PF00412	LIM domain	139	193	1.3E-9	IPR001781
SUPERFAMILY	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)	131	164	2.33E-5	-
Gene3D	G3DSA:2.10.110.10	Cysteine Rich Protein	134	198	1.8E-12	-
SMART	SM00132	lim_4	138	190	2.5E-9	IPR001781
ProSiteProfiles	PS50023	LIM domain profile.	137	197	11.375199	IPR001781
ProSitePatterns	PS00478	LIM zinc-binding domain signature.	139	173	-	IPR001781

Best hit

Source	Best Hit ID	Description
TAIR	AT2G39830.1	DA1-related protein 2.
RefSeq	XP_021845625.1	protein DA1-related 2 isoform X3 [Spinacia oleracea]
Swiss-Prot	Q0WSN2	Protein DA1-related 2 OS=Arabidopsis thaliana OX=3702 GN=DAR2 PE=1 SV=1
TrEMBL	A0A5B7A4I6	LIM zinc-binding domain-containing protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_020978 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg10623, jg11922, jg22828, jg2631, jg30622, jg34192, jg40110 ... jg6287
Aizoaceae	Mesembryanthemum crystallinum	3	gene_16525, gene_22660, gene_24209
Amaranthaceae	Atriplex hortensis	3	Ah012129, Ah026615, Ah035189
Amaranthaceae	Beta vulgaris	2	BVRB_2g025600, BVRB_6g138060
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg21312, Sbi_jg22542, Sbi_jg37755, Sbi_jg5903
Amaranthaceae	Salicornia europaea	2	Seu_jg16426, Seu_jg28089
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00013462, GOSA_00016367
Amaranthaceae	Suaeda glauca	4	Sgl34668, Sgl40091, Sgl62524, Sgl67069
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000003216, gene:ENSEOMG00000003533 ... gene:ENSEOMG00000017789, gene:ENSEOMG00000020545, gene:ENSEOMG00000025857, gene:ENSEOMG00000049558
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.1BG0018880, CQ.Regalona.r1.6AG0018230 ... CQ.Regalona.r1.6BG0019310
Anacardiaceae	Pistacia vera	2	pistato.v30207290, pistato.v30207310
Apiaceae	Apium graveolens	3	Ag10G01205, Ag2G00299, Ag5G00785
Arecaceae	Cocos nucifera	4	COCNU_04G001220, COCNU_05G000270, COCNU_06G019940 ... COCNU_14G010110
Arecaceae	Phoenix dactylifera	4	gene-LOC103704117, gene-LOC103712297, gene-LOC103720783 ... gene-LOC103723948
Asparagaceae	Asparagus officinalis	5	AsparagusV1_03.806.V1.1, AsparagusV1_05.277.V1.1 ... AsparagusV1_05.288.V1.1, AsparagusV1_08.1510.V1.1, AsparagusV1_09.491.V1.1
Asteraceae	Flaveria trinervia	7	Ftri16G12586, Ftri17G08511, Ftri17G22968, Ftri18G08564 ... Ftri6G20063, Ftri9G14359, Ftri9G20232
Brassicaceae	Arabidopsis thaliana	7	AT1G19270.1, AT2G39830.1, AT4G36860.1, AT5G66610.2 ... AT5G66620.1, AT5G66630.1, AT5G66640.2
Brassicaceae	Eutrema salsugineum	4	Thhalv10003845m.g.v1.0, Thhalv10007382m.g.v1.0 ... Thhalv10016501m.g.v1.0, Thhalv10024819m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp1g17180.v2.2, Sp2g30060.v2.2, Sp2g30080.v2.2 ... Sp4g22110.v2.2, Sp7g34510.v2.2
Brassicaceae	Brassica nigra	13	BniB02g062500.2N, BniB03g008130.2N, BniB04g011540.2N ... BniB04g033870.2N, BniB05g001980.2N, BniB06g005010.2N, BniB06g015480.2N, BniB07g018540.2N, BniB07g044230.2N, BniB07g044240.2N, BniB07g044260.2N, BniB07g044270.2N, BniB08g025620.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq02G1171, Ceq03G0232, Ceq03G1652, Ceq05G0718
Casuarinaceae	Casuarina glauca	3	Cgl02G1212, Cgl03G1773, Cgl05G0726
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno01g15020, gene.Cymno02g18860, gene.Cymno02g18870 ... gene.Cymno11g03310
Dunaliellaceae	Dunaliella salina	1	Dusal.0034s00023.v1.0
Hydrocharitaceae	Thalassia testudinum	11	gene.Thate02g21720, gene.Thate02g24920, gene.Thate02g30700 ... gene.Thate03g05160, gene.Thate03g09900, gene.Thate04g15030, gene.Thate04g15710, gene.Thate06g24850, gene.Thate06g24860, gene.Thate08g05710, gene.Thate11g00170
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-1302, nbisL1-mrna-3970, nbisL1-mrna-6603
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG02.1790, evm.TU.LG02.1793, evm.TU.LG02.2261 ... evm.TU.LG06.528
Plantaginaceae	Plantago ovata	6	Pov_00011934, Pov_00026787, Pov_00029368, Pov_00029387 ... Pov_00035779, Pov_00038792
Plumbaginaceae	Limonium bicolor	8	Lb1G03179, Lb1G03184, Lb1G05547, Lb3G21108, Lb4G25853 ... Lb5G27939, Lb6G29882, Lb6G32410
Poaceae	Echinochloa crus-galli	9	AH01.1193, AH01.4223, AH05.3937, BH01.4529, BH05.3570 ... BH05.4026, BH06.596, CH01.4829, CH05.4223
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_3AG0224060, gene-QOZ80_3AG0225840 ... gene-QOZ80_3AG0242390, gene-QOZ80_3BG0269080, gene-QOZ80_3BG0270650, gene-QOZ80_3BG0285760, gene-QOZ80_5AG0396550, gene-QOZ80_5BG0444820, gene-QOZ80_6AG0511220, gene-QOZ80_6BG0463240
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.2HG0097600.1, HORVU.MOREX.r3.4HG0341060.1 ... HORVU.MOREX.r3.4HG0389200.1, HORVU.MOREX.r3.5HG0436650.1
Poaceae	Lolium multiflorum	5	gene-QYE76_000601, gene-QYE76_000639, gene-QYE76_014508 ... gene-QYE76_062966, gene-QYE76_069066
Poaceae	Oryza coarctata	7	Oco05G009190, Oco05G018430, Oco06G009550, Oco11G003810 ... Oco12G003800, Oco23G009710, Oco24G009420
Poaceae	Oryza sativa	4	LOC_Os03g16090.1, LOC_Os03g42820.2, LOC_Os06g08400.1 ... LOC_Os12g40490.1
Poaceae	Paspalum vaginatum	7	gene-BS78_01G150000, gene-BS78_01G405200, gene-BS78_K146400 ... gene-BS78_05G099200, gene-BS78_05G283000, gene-BS78_08G130100, gene-BS78_10G065100
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0102206, Pt_Chr0102246, Pt_Chr0102256, Pt_Chr0104431 ... Pt_Chr0300465, Pt_Chr0300492, Pt_Chr0704232
Poaceae	Sporobolus alterniflorus	14	Chr01G009320, Chr01G009900, Chr01G030720, Chr04G007490 ... Chr04G018390, Chr04G024920, Chr06G019130, Chr07G004140, Chr07G023750, Chr11G021510, Chr12G008900, Chr12G027060, Chr12G027780, Chr12G027790
Poaceae	Thinopyrum elongatum	5	Tel2E01G049700, Tel4E01G113100, Tel4E01G371500 ... Tel5E01G130300, Tel6E01G740600
Poaceae	Triticum dicoccoides	9	gene_TRIDC2AG001610-24750, gene_TRIDC2AG001610-93564 ... gene_TRIDC2BG001730, gene_TRIDC4AG012710, gene_TRIDC4AG038560, gene_TRIDC4BG010780, gene_TRIDC4BG037600, gene_TRIDC5AG009530, gene_TRIDC5BG011100
Poaceae	Triticum aestivum	13	TraesCS2B02G007700.1, TraesCS2D02G016500.1 ... TraesCS2D02G016900.1, TraesCS4A02G093500.1, TraesCS4A02G245200.2, TraesCS4B02G070200.1, TraesCS4B02G210900.3, TraesCS4D02G069000.1, TraesCS4D02G211600.2, TraesCS5A02G060800.1, TraesCS5B02G071300.1, TraesCS5D02G072300.1, TraesCSU02G007800.1
Poaceae	Zea mays	6	Zm00001eb011970_P003, Zm00001eb030870_P002 ... Zm00001eb051170_P001, Zm00001eb198070_P001, Zm00001eb268250_P001, Zm00001eb397900_P001
Poaceae	Zoysia japonica	6	nbis-gene-20495, nbis-gene-2124, nbis-gene-34870 ... nbis-gene-36008, nbis-gene-3785, nbis-gene-44614
Poaceae	Zoysia macrostachya	6	Zma_g1556, Zma_g25275, Zma_g31466, Zma_g3179, Zma_g3237 ... Zma_g3950
Portulacaceae	Portulaca oleracea	8	evm.TU.LG04.1192, evm.TU.LG05.1729, evm.TU.LG05.225 ... evm.TU.LG05.940, evm.TU.LG07.1957, evm.TU.LG15.1201, evm.TU.LG25.1086, evm.TU.LG25.396
Posidoniaceae	Posidonia oceanica	4	gene.Posoc02g00530, gene.Posoc03g28060, gene.Posoc03g28160 ... gene.Posoc04g06440
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_3_RagTag.288, evm.TU.Scaffold_4_RagTag.1771 ... evm.TU.Scaffold_7_RagTag.537
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-19091, nbisL1-mrna-25969, nbisL1-mrna-335 ... nbisL1-mrna-539
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-1492, nbisL1-mrna-9168
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-21863, nbisL1-mrna-4570, nbisL1-mrna-6020
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000002l.537, evm.TU.utg000008l.991 ... evm.TU.utg000019l.1070
Rhizophoraceae	Kandelia obovata	3	Maker00001250, Maker00011998, Maker00012452
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-2061, nbisL1-mrna-5844, nbisL1-mrna-6472
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-12469, nbisL1-mrna-2290, nbisL1-mrna-9415
Salicaceae	Populus euphratica	8	populus_peu14288, populus_peu14302, populus_peu20349 ... populus_peu23504, populus_peu23508, populus_peu31924, populus_peu37677, populus_peu37737
Solanaceae	Lycium barbarum	7	gene-LOC132600473, gene-LOC132606134, gene-LOC132621778 ... gene-LOC132623036, gene-LOC132623746, gene-LOC132627956, gene-LOC132640354
Solanaceae	Solanum chilense	4	SOLCI000495900, SOLCI001325500, SOLCI004247600 ... SOLCI005390900
Solanaceae	Solanum pennellii	4	gene-LOC107012053, gene-LOC107012947, gene-LOC107015941 ... gene-LOC107018754
Tamaricaceae	Reaumuria soongarica	4	STRG.31574_chr11_+, STRG.8800_chr03_+, gene_12793, gene_9818
Tamaricaceae	Tamarix chinensis	4	TC04G2310, TC05G1503, TC08G0888, TC11G0536
Zosteraceae	Zostera marina	3	Zosma01g01160.v3.1, Zosma01g15930.v3.1, Zosma04g07390.v3.1