Basic Information
Locus ID:
TC05G1336
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 60465333 | 60466871 | - | TC05G1336 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.21 | 57,804.75 Da | 56.35 | 65.50 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 443 | 484 | 1.12163E-21 | - |
| Pfam | PF13639 | Ring finger domain | 443 | 484 | 4.7E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 431 | 490 | 3.74E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 405 | 490 | 1.7E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 443 | 483 | 5.6E-8 | IPR001841 |
| SMART | SM00744 | ringv_2 | 442 | 484 | 0.0061 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 443 | 484 | 12.046688 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 150 | 180 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 226 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 237 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 311 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02340.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021739349.1 | E3 ubiquitin ligase BIG BROTHER-related-like [Chenopodium quinoa] | 0 |
| Q8LPN7 | E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LC57 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23677 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035655 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g028550 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21701, Sbi_jg22112 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16040 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008659 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl67581 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000019226, gene:ENSEOMG00000019554 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0017770, CQ.Regalona.r1.2BG0019330 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.706, evm.TU.LG10.1128, evm.TU.LG11.84 ... |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.16640_chr08_-, STRG.2099_chr01_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G0103, TC05G1336 |