Basic Information
Locus ID:
TC05G1233
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 56749550 | 56754710 | - | TC05G1233 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.00 | 45,853.32 Da | 62.68 | 81.17 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14379 | UBA1_Rad23_plant | 192 | 241 | 2.5937E-30 | - |
| CDD | cd01805 | Ubl_Rad23 | 29 | 102 | 1.01681E-32 | - |
| Pfam | PF00627 | UBA/TS-N domain | 198 | 236 | 4.0E-14 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 387 | 422 | 6.8E-12 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 31 | 104 | 3.1E-20 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 307 | 362 | 7.7E-22 | IPR015360 |
| SUPERFAMILY | SSF46934 | UBA-like | 196 | 246 | 2.25E-11 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 370 | 428 | 1.94E-14 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 29 | 117 | 2.26E-23 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 304 | 368 | 2.49E-21 | IPR036353 |
| Gene3D | G3DSA:1.10.10.540 | - | 297 | 362 | 3.8E-26 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 191 | 241 | 7.7E-22 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 379 | 427 | 2.5E-23 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 25 | 108 | 8.4E-30 | - |
| SMART | SM00213 | ubq_7 | 29 | 103 | 6.2E-24 | IPR000626 |
| SMART | SM00165 | uba_6 | 387 | 424 | 1.0E-7 | IPR015940 |
| SMART | SM00165 | uba_6 | 198 | 238 | 7.7E-6 | IPR015940 |
| SMART | SM00727 | CBM | 305 | 348 | 1.6E-4 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 29 | 428 | 1.3E-114 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 196 | 239 | 12.426409 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 29 | 107 | 20.152342 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 384 | 425 | 13.727652 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 381 | 397 | 1.2E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 413 | 428 | 1.2E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 333 | 355 | 1.2E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 398 | 412 | 1.2E-32 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 151 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 176 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 124 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 281 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 179 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_042977694.1 | ubiquitin receptor RAD23c-like [Carya illinoinensis] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A8T1QPF7 | Ubiquitin receptor RAD23 OS=Carya illinoinensis OX=32201 GN=CIPAW_04G041600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology