Basic Information
Locus ID:
TC05G0587
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 21735946 | 21737131 | - | TC05G0587 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 38,657.61 Da | 60.93 | 74.13 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 107 | 150 | 1.61895E-19 | - |
| Pfam | PF13639 | Ring finger domain | 107 | 150 | 2.3E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 101 | 162 | 8.95E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 77 | 155 | 4.0E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 108 | 149 | 6.8E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 108 | 150 | 12.622055 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 287 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53820.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_042967726.1 | RING-H2 finger protein ATL3-like [Carya illinoinensis] | 0 |
| P0C035 | RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T1RF43 | RING-type E3 ubiquitin transferase OS=Carya illinoinensis OX=32201 GN=CIPAW_02G130500 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology