Basic Information
Locus ID:
TC05G0499
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 19729628 | 19738283 | - | TC05G0499 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.68 | 46,045.52 Da | 51.11 | 67.42 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 140 | 214 | 1.01528E-51 | - |
| CDD | cd12352 | RRM1_TIA1_like | 56 | 126 | 3.76414E-36 | - |
| CDD | cd12354 | RRM3_TIA1_like | 260 | 335 | 1.25732E-34 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 141 | 211 | 5.9E-18 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 262 | 328 | 2.3E-11 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 56 | 122 | 4.2E-13 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 252 | 345 | 5.7E-21 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 52 | 217 | 2.85E-44 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 137 | 218 | 1.2E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 136 | 2.4E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 236 | 339 | 5.5E-22 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 55 | 124 | 1.5E-17 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 261 | 331 | 1.8E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 140 | 213 | 2.1E-23 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 260 | 335 | 14.760482 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 54 | 128 | 15.647363 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 139 | 217 | 17.045906 | IPR000504 |
| Coils | Coil | Coil | 3 | 23 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_027125672.1 | oligouridylate-binding protein 1B-like [Coffea arabica] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P6XI40 | oligouridylate-binding protein 1B-like OS=Coffea arabica OX=13443 GN=LOC113742145 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology