Basic Information
Locus ID:
TC05G0223
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 8683876 | 8685894 | - | TC05G0223 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.84 | 36,940.77 Da | 22.84 | 92.70 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 15 | 316 | 1.73659E-65 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 196 | 241 | 0.012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 150 | 190 | 2.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 108 | 145 | 6.6E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 12 | 43 | 0.0057 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 78 | 103 | 0.038 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 246 | 283 | 3.7E-9 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 9 | 320 | 9.62E-67 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 10 | 326 | 6.8E-92 | IPR015943 |
| SMART | SM00320 | WD40_4 | 65 | 103 | 2.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 193 | 241 | 0.0011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 244 | 283 | 8.4E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 286 | 325 | 36.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 149 | 190 | 8.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 106 | 145 | 1.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 4 | 43 | 0.7 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 113 | 147 | 11.207411 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 156 | 199 | 12.480124 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 251 | 292 | 17.125254 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 251 | 286 | 13.501034 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 156 | 193 | 10.284687 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 228 | 250 | 9.171722 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 113 | 147 | 13.516088 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 132 | 146 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 270 | 284 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 270 | 284 | 1.3E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 177 | 191 | 1.3E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 132 | 146 | 1.3E-8 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79990.2 | structural molecules. | 0 |
| RefSeq | XP_030925466.1 | coatomer subunit beta'-1-like [Quercus lobata] | 0 |
| Q9CAA0 | Coatomer subunit beta'-1 OS=Arabidopsis thaliana OX=3702 GN=At1g79990 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1R3G7W2 | WD_REPEATS_REGION domain-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_28026 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology