Basic Information
Locus ID:
TC05G0026
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 1412930 | 1443068 | - | TC05G0026 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 57,844.06 Da | 59.84 | 83.25 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 340 | 514 | 2.34008E-106 | IPR044098 |
| Pfam | PF08969 | USP8 dimerisation domain | 9 | 100 | 1.5E-13 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 339 | 443 | 2.3E-16 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 338 | 470 | 1.44E-20 | - |
| SUPERFAMILY | SSF140856 | USP8 N-terminal domain-like | 21 | 113 | 4.32E-5 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 331 | 514 | 1.2E-69 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 7 | 124 | 1.3E-28 | - |
| SMART | SM00232 | pad1_6 | 339 | 467 | 3.6E-15 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 340 | 470 | 30.863485 | IPR037518 |
| Coils | Coil | Coil | 91 | 111 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_028113787.1 | AMSH-like ubiquitin thioesterase 1 [Camellia sinensis] | 0 |
| Q8VYB5 | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana OX=3702 GN=AMSH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2R6P355 | AMSH-like ubiquitin thioesterase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc21839 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology