Basic Information
Locus ID:
TC04G2506
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 101209797 | 101212172 | - | TC04G2506 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.47 | 37,960.98 Da | 41.44 | 68.31 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 36 | 120 | 6.23618E-43 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 244 | 308 | 3.06247E-19 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 37 | 120 | 3.1E-20 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 244 | 310 | 1.5E-11 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 241 | 313 | 2.23E-19 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 27 | 125 | 2.75E-32 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 27 | 132 | 4.5E-28 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 228 | 324 | 3.3E-18 | IPR036910 |
| SMART | SM01014 | ARID_2 | 30 | 120 | 4.3E-31 | - |
| SMART | SM00398 | hmgende2 | 243 | 312 | 3.6E-12 | IPR009071 |
| SMART | SM00501 | bright_3 | 34 | 125 | 2.2E-34 | IPR001606 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 33 | 124 | 25.994249 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 244 | 311 | 13.925385 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 241 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_018812054.1 | high mobility group B protein 9 isoform X2 [Juglans regia] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9CME3 | High mobility group B protein 9 OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology